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| LG | Position(cM) | Marker Name |
|---|---|---|
| 3 | 22 | E9E3 |
| 3 | 23.4 | E21C8 |
| 3 | 33.4 | E23G8 |
| 3 | 50.3 | E21A4 |
| 3 | 84.4 | E13A11 |
| 3 | 111.9 | Rho |
| 3 | 117.5 | E12A3 |
| 3 | 126.9 | E7G12 |
| 3 | 129.1 | E10E9 |
| 3 | 130.3 | E19A10 |
| 3 | 138.8 | E15E6 |
| 3 | 157.2 | E10E2 |
| 3 | 164.1 | E21A3 |
| 3 | 171.6 | GNAT1 |
| 3 | 182.1 | E20C5 |
| 3 | 189.9 | E18C6 |
| 3 | 194.7 | E18C7 |
| 3 | 197 | E8C9 |
| 3 | 205 | E28A6 |
| 3 | 206.1 | E12E6 |
| 3 | 217.8 | E17G3 |
| 3 | 223.4 | E9G8 |
| 3 | 235.2 | E16E8 |
| 3 | 258.4 | Foxa3 |
| 3 | 262.2 | E8A9 |
| 3 | 262.2 | E24E4 |
| 3 | 264.6 | E23C10 |
| 3 | 265.9 | E18G2 |
| 3 | 267.1 | E14C12 |
| 3 | 269.4 | E16G10 |
| 3 | 275.6 | E15G5 |
| 3 | 275.6 | E6E2 |
| 3 | 275.6 | E9G12 |
| 3 | 275.6 | E25C2 |
| 3 | 275.6 | E29A6 |
| 3 | 280.2 | E10G4 |
| 3 | 280.2 | E12A8 |
| 3 | 280.2 | E6G4 |
| 3 | 280.2 | Calm3 |
| 3 | 281.4 | E19A4 |
| 3 | 293.6 | E17E9 |
| 3 | 293.6 | E21A5 |
| 3 | 294.7 | E13G5 |
| 3 | 294.7 | E7A8 |
| 3 | 294.7 | E9G11 |
| 3 | 311.8 | E6C5 |
| 3 | 311.8 | E7G7 |
| 3 | 315.3 | E18G5 |
| 3 | 321.4 | E18C8 |
| 3 | 322.6 | E7G2 |
| 3 | 333.2 | ctg325 |
| 3 | 343.2 | E18E7 |
| 3 | 343.2 | E5E4 |
| 3 | 343.2 | E5E6 |
| 3 | 413.2 | E10G12 |
| 3 | 413.2 | E7C10 |
| 3 | 420.7 | E6C2 |
| 3 | 427 | E16G1 |
| 3 | 431.7 | E19G10 |
| 3 | 438.9 | E7C8 |
| 3 | 445.7 | E17G8 |
| 3 | 450.1 | E10A8 |
| 3 | 455.3 | E22G5 |
| 3 | 455.3 | E25G1 |
| 3 | 527.9 | E18G10 |
| 3 | 531.7 | E10A12 |
| 3 | 531.7 | E18A3 |
| 3 | 546.7 | E15E2 |
| 3 | 557.3 | HLP1 |
| 3 | 564.9 | Hoxa4 |
| 3 | 564.9 | Hoxa9 |
| 3 | 589.5 | E6C8 |
| 3 | 643 | E17E8 |
| 3 | 646.5 | E13E5 |
| 3 | 646.5 | E19G3 |
| 3 | 646.5 | E20E2 |
| 3 | 647.7 | E12C2 |
| 3 | 661.4 | betaTH |
| 3 | - | E6E1 |
| 3 | - | E7E5 |